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Reaction intermediate in the photocycle of pyp, intermediate occupied between 100 micro-seconds to 5 milli-seconds

Analyse Reaction intermediate in the photocycle of pyp, intermediate occupied between… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1S4S
Type: protein
Length: 125 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Photoactive yellow protein
UniProt: P16113
Ligands: HC4
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photoactive yellow protein	protein	125	31% helix, 30% strand	P16113

Ligands and binding sites

HC4 · 4'-hydroxycinnamic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	50	0.65	0.95	15	HC4

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

1S4S · Reaction Intermediate in the Photocycle of PYP, intermediate occupied between 100… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P16113
Elsewhere: RCSB PDB 1S4S · PDBe 1S4S · UniProt P16113

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