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Crystal structure of penicillin-binding protein-related factor a from bacillus subtilis.

Analyse Crystal structure of penicillin-binding protein-related factor a from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RZN
Type: protein
Length: 300 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Recombination protein U
UniProt: P39792
Pockets: 3 · best druggability 0.47

Structure

x-ray diffraction · 2 distinct chains · 39% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Recombination protein U	protein	150	39% helix, 31% strand	P39792
B	Recombination protein U	protein	150	38% helix, 29% strand	P39792

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	166	0.47	0.76	28	empty
2	180	0.46	0.75	29	empty
3	50	0.29	0.76	18	empty

Interfaces

1 interface between chains.

A–B · 1089 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

1RZN · Crystal Structure of Penicillin-binding protein-related factor A from Bacillus Subtilis. · the same entry in another collection · chain A against A, TM-score 1.00
P39792 · AlphaFold monomer V2.0 prediction for holliday junction resolvase recu (P39792) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39792
Elsewhere: RCSB PDB 1RZN · PDBe 1RZN · UniProt P39792

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