Research workbench

Crystal structure of hen serum transferrin in apo- form

Analyse Crystal structure of hen serum transferrin in apo- form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RYX
Type: protein
Length: 686 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ovotransferrin
UniProt: P02789
Pockets: 9 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ovotransferrin	protein	686	24% helix, 8% strand	P02789

Pockets

9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	972	0.75	0.78	95	empty
2	216	0.73	0.88	38	empty
3	1192	0.72	0.76	93	empty
4	170	0.50	0.77	35	empty
5	114	0.45	0.78	24	empty

Modifications

Observed in the structure: 15 disulfide (disulfide).

Compared structures

1RYX · Crystal structure of hen serum transferrin in apo- form · the same entry in another collection · chain A against A, TM-score 1.00
P02789 · AlphaFold monomer V2.0 prediction for ovotransferrin (P02789) · a predicted model of the same protein · chain A against A, TM-score 0.76

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02789
Elsewhere: RCSB PDB 1RYX · PDBe 1RYX · UniProt P02789

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.