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Crystal structure of protein yfih from salmonella enterica serovar typhi, pfam DUF152
Analyse Crystal structure of protein yfih from salmonella enterica serovar typhi, pfam… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RW0
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical protein
- UniProt
- Q8Z4J1
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Conserved hypothetical protein | protein | 243 | 23% helix, 25% strand | Q8Z4J1 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.69 | 0.81 | 56 | empty |
| 2 | 333 | 0.63 | 0.79 | 27 | empty |
| 3 | 228 | 0.52 | 0.76 | 31 | empty |
| 4 | 207 | 0.50 | 0.76 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 924 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 1RW0 · Crystal structure of protein yfiH from Salmonella enterica serovar Typhi, Pfam DUF152 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Z4J1
- Elsewhere: RCSB PDB 1RW0 · PDBe 1RW0 · UniProt Q8Z4J1
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