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Crystal structure of the actin-crosslinking core of schizosaccharomyces pombe fimbrin

Analyse Crystal structure of the actin-crosslinking core of schizosaccharomyces pombe… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RT8
Type: protein
Length: 467 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fimbrin
UniProt: O59945
Ligands: SO4
Pockets: 3 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 60% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fimbrin	protein	467	60% helix, 0% strand	O59945

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	824	0.75	0.79	79	SO4
2	110	0.38	0.75	23	empty
3	58	0.30	0.75	11	empty

Compared structures

1RT8 · Crystal structure of the actin-crosslinking core of schizosaccharomyces pombe fimbrin · the same entry in another collection · chain A against A, TM-score 1.00
O59945 · AlphaFold monomer V2.0 prediction for fimbrin (O59945) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59945
Elsewhere: RCSB PDB 1RT8 · PDBe 1RT8 · UniProt O59945

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