Research workbench
X-ray study of the DNA oligomer D(ATATAT) in P65 space group
Analyse X-ray study of the DNA oligomer D(ATATAT) in P65 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RSB
- Type
- DNA
- Length
- 22 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*AP*TP*AP*TP*AP*T)-3'
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | 5'-D(*AP*TP*AP*TP*AP*T)-3' | dna | 6 | — | — |
| D | 5'-D(*AP*TP*AP*TP*AP*T)-3' | dna | 4 | — | — |
Interfaces
5 interfaces between chains.
- A–B · 274 Ų buried · 24 hydrogen bonds · nucleic-nucleic
- C–D · 199 Ų buried · 14 hydrogen bonds · nucleic-nucleic
- A–C · 132 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- B–C · 92 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- A–D · 90 Ų buried · 1 hydrogen bond · nucleic-nucleic
Compared structures
- 1RSB · X-ray study of the DNA oligomer d(ATATAT) in P65 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1RSB · PDBe 1RSB
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