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Spatial model of L7 dimer from E.COLI with one hinge region in helical state

Analyse Spatial model of L7 dimer from E.COLI with one hinge region in helical state in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1RQV
Type: protein
Length: 240 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 50S ribosomal protein L7/L12
UniProt: P0A7K2
Pockets: 1 · best druggability 0.68

Structure

solution nmr · 1 distinct chain · 62% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	50S ribosomal protein L7/L12	protein	120	62% helix, 15% strand	P0A7K2

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	143	0.68	0.88	32	empty

Interfaces

1 interface between chains.

A–B · 975 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

1RQV · Spatial model of L7 dimer from E.coli with one hinge region in helical state · the same entry in another collection · chain A against A, TM-score 1.00
P0A7K2 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L7/L12 (P0A7K2) · a predicted model of the same protein · chain A against A, TM-score 0.57

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A7K2
Elsewhere: RCSB PDB 1RQV · PDBe 1RQV · UniProt P0A7K2

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