Research workbench
Propionibacterium shermanii transcarboxylase 5S subunit bound to oxaloacetate
Analyse Propionibacterium shermanii transcarboxylase 5S subunit bound to oxaloacetate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RQE
- Type
- protein
- Length
- 472 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcarboxylase 5S subunit
- EC
- 2.1.3.1
- UniProt
- Q70AC7
- Ligands
- OAA, CO
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcarboxylase 5S subunit (EC 2.1.3.1) | protein | 472 | 49% helix, 10% strand | Q70AC7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 560 | 0.69 | 0.79 | 65 | OAA, CO |
| 2 | 106 | 0.46 | 0.79 | 17 | empty |
| 3 | 58 | 0.28 | 0.74 | 12 | empty |
Compared structures
- 1RQE · Propionibacterium shermanii transcarboxylase 5S subunit bound to oxaloacetate · the same entry in another collection · chain A against A, TM-score 1.00
- Q70AC7 · AlphaFold monomer V2.0 prediction for methylmalonyl-CoA carboxyltransferase 5S subunit… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70AC7
- Elsewhere: RCSB PDB 1RQE · PDBe 1RQE · UniProt Q70AC7
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