Research workbench
DNA (5'-D(MCYP*CP*TP*CP*C)-3') tetramer, NMR, 1 structure
Analyse DNA (5'-D(MCYP*CP*TP*CP*C)-3') tetramer, NMR, 1 structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RME
- Type
- DNA
- Length
- 20 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*(MCY)P*CP*TP*CP*C)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*(MCY)P*CP*TP*CP*C)-3') | dna | 5 | — | — |
Interfaces
6 interfaces between chains.
- C–D · 412 Ų buried · 18 hydrogen bonds · nucleic-nucleic
- A–B · 405 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- B–C · 321 Ų buried · 16 hydrogen bonds · nucleic-nucleic
- A–D · 318 Ų buried · 15 hydrogen bonds · nucleic-nucleic
- A–C · 251 Ų buried · 24 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 1RME · DNA (5'-D(MCYP*CP*TP*CP*C)-3') tetramer, NMR, 1 structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1RME · PDBe 1RME
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