Research workbench
Family GH5 endo-beta-mannanase from lycopersicon esculentum (tomato)
Analyse Family GH5 endo-beta-mannanase from lycopersicon esculentum (tomato) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RH9
- Type
- protein
- Length
- 370 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-beta-mannanase
- EC
- 3.2.1.78
- UniProt
- Q93WT4
- Pockets
- 2 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-beta-mannanase (EC 3.2.1.78) | protein | 370 | 45% helix, 16% strand | Q93WT4 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 131 | 0.41 | 0.75 | 19 | empty |
| 2 | 109 | 0.38 | 0.75 | 19 | empty |
Compared structures
- 1RH9 · Family GH5 endo-beta-mannanase from Lycopersicon esculentum (tomato) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93WT4
- Elsewhere: RCSB PDB 1RH9 · PDBe 1RH9 · UniProt Q93WT4
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