Research workbench
Crystal structure of the cytotoxic bacterial protein colicin B at 2.5 a resolution
Analyse Crystal structure of the cytotoxic bacterial protein colicin B at 2.5 a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RH1
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Colicin B
- UniProt
- P05819
- Pockets
- 2 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Colicin B | protein | 490 | 39% helix, 21% strand | P05819 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.62 | 0.88 | 29 | empty |
| 2 | 66 | 0.32 | 0.75 | 15 | empty |
Compared structures
- 1RH1 · crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P05819 · AlphaFold monomer V2.0 prediction for colicin-B (P05819) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05819
- Elsewhere: RCSB PDB 1RH1 · PDBe 1RH1 · UniProt P05819
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