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Initiation factor 5A from archebacterium pyrobaculum aerophilum

Analyse Initiation factor 5A from archebacterium pyrobaculum aerophilum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1BKB
Type: protein
Length: 136 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Translation initiation factor 5A
UniProt: P56635
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Translation initiation factor 5A	protein	136	7% helix, 54% strand	P56635

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.34	0.78	16	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

1BKB · Initiation factor 5A from archebacterium pyrobaculum aerophilum · the same entry in another collection · chain A against A, TM-score 1.00
P56635 · AlphaFold monomer V2.0 prediction for translation initiation factor 5A (P56635) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56635
Elsewhere: RCSB PDB 1BKB · PDBe 1BKB · UniProt P56635

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