Research workbench
X-ray structure of TM1055 northeast structural genomics consortium target VT76
Analyse X-ray structure of TM1055 northeast structural genomics consortium target VT76 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1RCU
- Type
- protein
- Length
- 680 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical protein VT76
- UniProt
- Q9X0E5
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Conserved hypothetical protein VT76 | protein | 170 | 39% helix, 20% strand | Q9X0E5 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.54 | 0.83 | 26 | empty |
| 2 | 126 | 0.54 | 0.82 | 26 | empty |
| 3 | 104 | 0.52 | 0.83 | 23 | empty |
| 4 | 96 | 0.47 | 0.81 | 22 | empty |
Interfaces
6 interfaces between chains.
- A–C · 1158 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 1155 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 623 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 613 Ų buried · 7 hydrogen bonds · protein-protein
- B–C · 102 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 1RCU · X-ray structure of TM1055 northeast structural genomics consortium target VT76 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X0E5
- Elsewhere: RCSB PDB 1RCU · PDBe 1RCU · UniProt Q9X0E5
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