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Three-dimensional structure of yaae from bacillus subtilis

Analyse Three-dimensional structure of yaae from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1R9G
Type: protein
Length: 392 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein yaae
UniProt: P37528
Pockets: 3 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Hypothetical protein yaae	protein	196	29% helix, 28% strand	P37528

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	228	0.46	0.73	26	empty
2	58	0.44	0.83	19	empty
3	66	0.32	0.75	14	empty

Interfaces

1 interface between chains.

A–B · 566 Å² buried · 11 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

1R9G · Three-dimensional Structure of YaaE from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
P37528 · AlphaFold monomer V2.0 prediction for pyridoxal 5'-phosphate synthase subunit pdxt… · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P37528
Elsewhere: RCSB PDB 1R9G · PDBe 1R9G · UniProt P37528

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