Research workbench
HPV-16 E2C solution structure
Analyse HPV-16 E2C solution structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1R8P
- Type
- protein
- Length
- 162 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory protein E2
- UniProt
- P03120
- Pockets
- 3 · best druggability 0.54
Structure
solution nmr · 1 distinct chain · 28% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Regulatory protein E2 | protein | 81 | 28% helix, 25% strand | P03120 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.54 | 0.82 | 25 | empty |
| 2 | 50 | 0.54 | 0.88 | 20 | empty |
| 3 | 76 | 0.36 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 858 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 1R8P · HPV-16 E2C solution structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03120
- Elsewhere: RCSB PDB 1R8P · PDBe 1R8P · UniProt P03120
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.