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SEC7 domain of the arf exchange factor arno with brefeldin a- sensitizing mutations

Analyse SEC7 domain of the arf exchange factor arno with brefeldin a- sensitizing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1R8M
Type
protein
Length
196 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Arno
UniProt
Q99418
Ligands
MN

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
EArnoprotein19667% helix, 0% strandQ99418

Ligands and binding sites

  • MN · Manganese (II) ion · metal · chains E
  • FMT · Formic acid · additive · chains E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (artifact).

Compared structures

  • 1R8M · SEC7 domain of the arf exchange factor arno with brefeldin a-sensitizing mutations · the same entry in another collection · chain E against E, TM-score 1.00
  • Q99418 · AlphaFold monomer V2.0 prediction for cytohesin-2 (Q99418) · a predicted model of the same protein · chain E against A, TM-score 0.94

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