Research workbench
Crystal structure of apo-mannanase 26A from psudomonas cellulosa
Analyse Crystal structure of apo-mannanase 26A from psudomonas cellulosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1R7O
- Type
- protein
- Length
- 353 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mannanase a
- EC
- 3.2.1.78
- UniProt
- P49424
- Ligands
- ZN, SO4
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mannanase a (EC 3.2.1.78) | protein | 353 | 37% helix, 14% strand | P49424 |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 472 | 0.69 | 0.80 | 30 | empty |
| 2 | 162 | 0.44 | 0.75 | 25 | empty |
| 3 | 52 | 0.27 | 0.73 | 15 | MES |
Compared structures
- 1R7O · Crystal Structure of apo-mannanase 26A from Psudomonas cellulosa · the same entry in another collection · chain A against A, TM-score 1.00
- P49424 · AlphaFold monomer V2.0 prediction for mannan endo-1,4-beta- mannosidase (P49424) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49424
- Elsewhere: RCSB PDB 1R7O · PDBe 1R7O · UniProt P49424
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