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Crystal structure of the tRNA processing enzyme RNase pH from pseudomonas aeruginosa in complex with phosphate

Analyse Crystal structure of the tRNA processing enzyme RNase pH from pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1R6M
Type: protein
Length: 236 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribonuclease pH
EC: 2.7.7.56
UniProt: P50597
Ligands: PO4
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ribonuclease pH (EC 2.7.7.56)	protein	236	33% helix, 31% strand	P50597

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	194	0.52	0.78	40	PO4

Compared structures

1R6M · Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In… · the same entry in another collection · chain A against A, TM-score 1.00
P50597 · AlphaFold monomer V2.0 prediction for ribonuclease pH (P50597) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P50597
Elsewhere: RCSB PDB 1R6M · PDBe 1R6M · UniProt P50597

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