Research workbench
Intramolecular DNA triplex with RNA third strand, NMR, 10 structures
Analyse Intramolecular DNA triplex with RNA third strand, NMR, 10 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1R3X
- Type
- DNA + RNA
- Length
- 24 nucleotides
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3'); DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3'); RNA…
Structure
solution nmr · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*AP*GP*AP*GP*AP*GP*AP*A)-3') | dna | 8 | — | — |
| B | DNA (5'-D(*TP*TP*CP*TP*CP*TP*CP*T)-3') | dna | 8 | — | — |
| C | RNA (5'-R(*UP*CP*UP*CP*UP*CP*UP*U)-3') | rna | 8 | — | — |
Interfaces
3 interfaces between chains.
- A–C · 551 Ų buried · 45 hydrogen bonds · nucleic-nucleic
- A–B · 376 Ų buried · 45 hydrogen bonds · nucleic-nucleic
- B–C · 128 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 1R3X · Intramolecular DNA triplex with RNA third strand, NMR, 10 structures · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1R3X · PDBe 1R3X
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