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Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic ether reductases, and their relationship to isoflavone reductases

Analyse Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QYC
Type: protein
Length: 614 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phenylcoumaran benzylic ether reductase PT1
UniProt: Q9LL41
Pockets: 2 · best druggability 0.89

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Phenylcoumaran benzylic ether reductase PT1	protein	307	42% helix, 16% strand	Q9LL41

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	932	0.89	0.91	143	empty
2	166	0.56	0.80	22	empty

Interfaces

1 interface between chains.

A–B · 1198 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

1QYC · Crystal structures of pinoresinol-lariciresinol and phenylcoumaran benzylic ether… · the same entry in another collection · chain A against A, TM-score 1.00
Q9LL41 · AlphaFold monomer V2.0 prediction for phenylcoumaran benzylic ether reductase PT1 (Q9LL41) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LL41
Elsewhere: RCSB PDB 1QYC · PDBe 1QYC · UniProt Q9LL41

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