Research workbench
Crystal structure of a four-stranded intercalated DNA: D(C4)
Analyse Crystal structure of a four-stranded intercalated DNA: D(C4) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 190D
- Type
- DNA
- Length
- 32 nucleotides
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*CP*CP*C)-3')
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | DNA (5'-D(*CP*CP*CP*C)-3') | dna | 4 | — | — |
Interfaces
16 interfaces between chains.
- F–G · 424 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- B–C · 396 Ų buried · 34 hydrogen bonds · nucleic-nucleic
- A–D · 394 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- E–H · 392 Ų buried · 27 hydrogen bonds · nucleic-nucleic
- E–G · 369 Ų buried · 8 hydrogen bonds · nucleic-nucleic
Compared structures
- 190D · Crystal structure of a four-stranded intercalated DNA: d(C4) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 190D · PDBe 190D
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