Research workbench
Crystal structure of limulus polyphemus sap
Analyse Crystal structure of limulus polyphemus sap in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QTJ
- Type
- protein
- Length
- 434 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (serum amyloid P component)
- Pockets
- 7 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Protein (serum amyloid P component) | protein | 217 | 6% helix, 47% strand | — |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1081 | 0.84 | 0.85 | 119 | empty |
| 2 | 981 | 0.83 | 0.85 | 117 | empty |
| 3 | 1057 | 0.78 | 0.80 | 136 | empty |
| 4 | 60 | 0.35 | 0.78 | 18 | empty |
| 5 | 87 | 0.34 | 0.74 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 155 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 1QTJ · Crystal structure of limulus polyphemus sap · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1QTJ · PDBe 1QTJ
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