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N-terminally truncated C3D,G fragment of the complement system

Analyse N-terminally truncated C3D,G fragment of the complement system in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QQF
Type: protein
Length: 277 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (complement C3DG)
UniProt: P01026
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (complement C3DG)	protein	277	65% helix, 2% strand	P01026

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	145	0.42	0.75	22	empty

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, oxidation).

Compared structures

1QQF · N-terminally truncated C3D,G fragment of the complement system · the same entry in another collection · chain A against A, TM-score 1.00
P01026 · AlphaFold monomer V2.0 prediction for complement C3 (P01026) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01026
Elsewhere: RCSB PDB 1QQF · PDBe 1QQF · UniProt P01026

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