Research workbench
Structure of aspergillus niger epoxide hydrolase
Analyse Structure of aspergillus niger epoxide hydrolase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QO7
- Type
- protein
- Length
- 770 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epoxide hydrolase
- EC
- 3.3.2.3
- UniProt
- Q9UR30
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Epoxide hydrolase (EC 3.3.2.3) | protein | 385 | 46% helix, 15% strand | Q9UR30 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.67 | 0.81 | 35 | empty |
| 2 | 313 | 0.67 | 0.81 | 37 | empty |
| 3 | 218 | 0.54 | 0.77 | 26 | empty |
| 4 | 207 | 0.53 | 0.77 | 25 | empty |
| 5 | 61 | 0.33 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 2455 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 1QO7 · Structure of Aspergillus niger epoxide hydrolase · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UR30
- Elsewhere: RCSB PDB 1QO7 · PDBe 1QO7 · UniProt Q9UR30
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