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Ves V 5, an allergen from vespula vulgaris venom

Analyse Ves V 5, an allergen from vespula vulgaris venom in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QNX
Type: protein
Length: 209 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ves V 5
UniProt: Q05110
Ligands: NA
Pockets: 2 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ves V 5	protein	209	33% helix, 19% strand	Q05110

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	191	0.49	0.76	25	empty
2	76	0.36	0.76	16	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1QNX · Ves v 5, an allergen from Vespula vulgaris venom · the same entry in another collection · chain A against A, TM-score 1.00
Q05110 · AlphaFold monomer V2.0 prediction for venom allergen 5 (Q05110) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q05110
Elsewhere: RCSB PDB 1QNX · PDBe 1QNX · UniProt Q05110

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