Research workbench
Pyrone synthase (pys) from gerbera hybrida
Analyse Pyrone synthase (pys) from gerbera hybrida in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QLV
- Type
- protein
- Length
- 754 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pyrone synthase
- EC
- 2.3.1.74
- UniProt
- P48391
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pyrone synthase (EC 2.3.1.74) | protein | 378 | 44% helix, 23% strand | P48391 |
| B | Pyrone synthase (EC 2.3.1.74) | protein | 376 | 42% helix, 23% strand | P48391 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.76 | 0.97 | 32 | empty |
| 2 | 79 | 0.73 | 0.97 | 22 | empty |
| 3 | 217 | 0.60 | 0.81 | 29 | empty |
| 4 | 154 | 0.59 | 0.82 | 29 | empty |
| 5 | 53 | 0.39 | 0.81 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 2380 Ų buried · 56 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48391
- Elsewhere: RCSB PDB 1QLV · PDBe 1QLV · UniProt P48391
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