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Three dimensional structure of physalis mottle virus : implications for the viral assembly

Analyse Three dimensional structure of physalis mottle virus : implications for the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QJZ
Type: protein
Length: 555 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Coat protein
UniProt: P36351
Pockets: 4 · best druggability 0.55

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coat protein	protein	179	6% helix, 25% strand	P36351
B, C	Coat protein	protein	188	13% helix, 32% strand	P36351

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.55	0.80	24	empty
2	91	0.37	0.76	24	empty
3	55	0.35	0.79	16	empty
4	53	0.29	0.75	17	empty

Interfaces

3 interfaces between chains.

B–C · 1004 Å² buried · 24 hydrogen bonds · protein-protein
A–C · 737 Å² buried · 11 hydrogen bonds · protein-protein
A–B · 703 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

1QJZ · Three Dimensional Structure of Physalis Mottle Virus : Implications for the Viral Assembly · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P36351
Elsewhere: RCSB PDB 1QJZ · PDBe 1QJZ · UniProt P36351

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