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High resolution structure of the outer membrane protein a (ompa) transmembrane domain

Analyse High resolution structure of the outer membrane protein a (ompa) transmembrane… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QJP
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein a
UniProt: P02934
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 78% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein a	protein	137	0% helix, 78% strand	P02934

Ligands and binding sites

C8E · (hydroxyethyloxy)tri(ethyloxy)octane · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	229	0.55	0.78	26	empty

Compared structures

1QJP · High resolution structure of the outer membrane protein a (ompa) transmembrane domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02934
Elsewhere: RCSB PDB 1QJP · PDBe 1QJP · UniProt P02934

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