Research workbench
A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres
Analyse A triple beta-spiral in the adenovirus fibre shaft reveals a new structural… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QIU
- Type
- protein
- Length
- 1,584 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adenovirus fibre
- UniProt
- P03275
- Pockets
- 17 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Adenovirus fibre | protein | 264 | 7% helix, 43% strand | P03275 |
Pockets
17 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.83 | 0.95 | 53 | empty |
| 2 | 216 | 0.83 | 0.96 | 45 | empty |
| 3 | 1106 | 0.80 | 0.81 | 107 | empty |
| 4 | 974 | 0.79 | 0.81 | 108 | empty |
| 5 | 74 | 0.43 | 0.80 | 21 | empty |
Interfaces
11 interfaces between chains.
- A–B · 2483 Ų buried · 43 hydrogen bonds · protein-protein
- D–E · 2466 Ų buried · 42 hydrogen bonds · protein-protein
- B–C · 2463 Ų buried · 39 hydrogen bonds · protein-protein
- E–F · 2430 Ų buried · 38 hydrogen bonds · protein-protein
- D–F · 2416 Ų buried · 36 hydrogen bonds · protein-protein
Compared structures
- 1QIU · A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03275
- Elsewhere: RCSB PDB 1QIU · PDBe 1QIU · UniProt P03275
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