Research workbench
Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA
Analyse Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QDA
- Type
- DNA
- Length
- 6 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5' -D(CP*GP*CP*(G49)P*CP*GP)-3'
- Ligands
- DM6
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5' -D(CP*GP*CP*(G49)P*CP*GP)-3' | dna | 6 | — | — |
Ligands and binding sites
- DM6 · 4'-epidoxorubicin · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, nucleotide modification).
Compared structures
- 1QDA · Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1QDA · PDBe 1QDA
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