Research workbench
Partial model for 30S ribosomal subunit
Analyse Partial model for 30S ribosomal subunit in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QD7
- Type
- protein
- Length
- 946 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- S4 ribosomal protein; S5 ribosomal protein; S6 ribosomal protein; S7 ribosomal protein…
- UniProt
- P81288, P02357, P23370, P17291, P24319, P05766, P23828
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 8 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | S4 ribosomal protein | protein | 159 | 0% helix, 0% strand | P81288 |
| D | S5 ribosomal protein | protein | 145 | 0% helix, 0% strand | P02357 |
| E | S6 ribosomal protein | protein | 97 | 0% helix, 0% strand | P23370 |
| F | S7 ribosomal protein | protein | 135 | 0% helix, 0% strand | P17291 |
| G | S8 ribosomal protein | protein | 136 | 0% helix, 0% strand | P24319 |
| H | S15 ribosomal protein | protein | 85 | 0% helix, 0% strand | P05766 |
| I | S17 ribosomal protein | protein | 89 | 0% helix, 0% strand | P23828 |
| J | S20 ribosomal protein | protein | 100 | 0% helix, 0% strand | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.33 | 0.72 | 23 | empty |
Compared structures
- 1QD7 · Partial model for 30S ribosomal subunit · the same entry in another collection · chain I against I, TM-score 1.00
- P81288 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S4 (P81288) · a predicted model of the same protein · chain C against A, TM-score 0.98
- P24319 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S8 (P24319) · a predicted model of the same protein · chain G against A, TM-score 0.96
- P23370 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S6 (P23370) · a predicted model of the same protein · chain E against A, TM-score 0.94
- P05766 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S15 (P05766) · a predicted model of the same protein · chain H against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81288
- Every structure of UniProt P02357
- Every structure of UniProt P23370
- Every structure of UniProt P17291
- Every structure of UniProt P24319
- Every structure of UniProt P05766
- Every structure of UniProt P23828
- Elsewhere: RCSB PDB 1QD7 · PDBe 1QD7 · UniProt P81288 · UniProt P02357 · UniProt P23370 · UniProt P17291 · UniProt P24319 · UniProt P05766 · UniProt P23828
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