Research workbench
Flavocytochrome B2, ARG289LYS mutant
Analyse Flavocytochrome B2, ARG289LYS mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1QCW
- Type
- protein
- Length
- 770 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Flavocytochrome B2
- EC
- 1.1.2.3
- UniProt
- P00175
- Ligands
- FNS
- Pockets
- 10 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Flavocytochrome B2 (EC 1.1.2.3) | protein | 385 | 44% helix, 12% strand | P00175 |
Ligands and binding sites
- FNS · N-sulfo-flavin mononucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 224 | 0.70 | 0.87 | 41 | FNS |
| 2 | 238 | 0.70 | 0.86 | 40 | FNS |
| 3 | 87 | 0.49 | 0.82 | 14 | empty |
| 4 | 77 | 0.46 | 0.81 | 13 | empty |
| 5 | 123 | 0.44 | 0.77 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 2693 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00175
- Elsewhere: RCSB PDB 1QCW · PDBe 1QCW · UniProt P00175
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