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Solution NMR structure of ectodomain of SIV GP41, restrained regularized mean structure plus 29 simulated annealing structures

Analyse Solution NMR structure of ectodomain of SIV GP41, restrained regularized mean… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1QCE
Type: protein
Length: 369 residues
Chains: 3
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (GP41)
UniProt: Q88031
Pockets: 1 · best druggability 0.50

Structure

solution nmr · 1 distinct chain · 75% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Protein (GP41)	protein	123	75% helix, 2% strand	Q88031

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.50	0.87	12	empty

Interfaces

3 interfaces between chains.

A–C · 2050 Å² buried · 29 hydrogen bonds · protein-protein
A–B · 2050 Å² buried · 29 hydrogen bonds · protein-protein
B–C · 2043 Å² buried · 29 hydrogen bonds · protein-protein

Compared structures

1QCE · Solution NMR structure of ectodomain of SIV GP41, restrained regularized mean structure… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q88031
Elsewhere: RCSB PDB 1QCE · PDBe 1QCE · UniProt Q88031

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