Research workbench
High resolution NMR structure of the stereoregular (all-rp)- phosphorothioate-DNA/RNA hybrid D (G*PS*C*PS*G*PS*T*PS*C*PS*A*PS*G*PS*G)R(CCUGACGC), minimized average structure
Analyse High resolution NMR structure of the stereoregular (all-rp)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8PSH
- Type
- DNA + RNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*DGP*(SC)P*(GS)P*(PST)P*(SC)P*(AS)P*(GS)P*(GS))- 3'); RNA…
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*DGP*(SC)P*(GS)P*(PST)P*(SC)P*(AS)P*(GS)P*(GS))- 3') | dna | 8 | — | — |
| B | RNA (5'-R(*CP*CP*UP*GP*AP*CP*GP*C)-3') | rna | 8 | — | — |
Interfaces
1 interface between chains.
- A–B · 386 Ų buried · 46 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 7 modified (nucleotide modification).
Compared structures
- 8PSH · High resolution NMR structure of the stereoregular (all-rp)-phosphorothioate-DNA/RNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 8PSH · PDBe 8PSH
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