Research workbench
Cryoem structure of igld
Analyse Cryoem structure of igld in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8DQL
- Type
- protein
- Length
- 771 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Secretion system protein
- UniProt
- A0A6I4RY94
- Pockets
- 13 · best druggability 0.85
Structure
electron microscopy · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, A, B | Secretion system protein | protein | 257 | 40% helix, 24% strand | A0A6I4RY94 |
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 901 | 0.85 | 0.87 | 97 | empty |
| 2 | 674 | 0.79 | 0.84 | 74 | empty |
| 3 | 63 | 0.71 | 0.97 | 17 | empty |
| 4 | 106 | 0.69 | 0.91 | 15 | empty |
| 5 | 52 | 0.60 | 0.92 | 14 | empty |
Interfaces
3 interfaces between chains.
- C–A · 2189 Ų buried · 12 hydrogen bonds · protein-protein
- C–B · 2187 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 2183 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 8DQL · CryoEM structure of IglD · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6I4RY94
- Elsewhere: RCSB PDB 8DQL · PDBe 8DQL · UniProt A0A6I4RY94
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