Research workbench
Spinach 19S proteasome
Analyse Spinach 19S proteasome in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8AMZ
- Type
- protein
- Length
- 6,986 residues
- Chains
- 17
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q41365, A0A0K9QMF8, A0A0K9QG12, A0A0K9QSR5, A0A0K9RWB0, A0A0K9QR38, A0A0K9QHF5, A0A0K9R856, A0A0K9RR58, A0A0K9QPY6, A0A0K9RRW6, A0A0K9RYG8, A0A0K9QD81, A0A0K9QUR6, A0A0K9RA51, A0A0K9RNX4, A0A0K9QVX1
- Ligands
- ATP, ADP
Structure
electron microscopy · 17 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 394 | — | Q41365 |
| I | — | protein | 384 | — | A0A0K9QMF8 |
| J | — | protein | 362 | — | A0A0K9QG12 |
| K | — | protein | 380 | — | A0A0K9QSR5 |
| L | — | protein | 375 | — | A0A0K9RWB0 |
| M | — | protein | 376 | — | A0A0K9QR38 |
| V | — | protein | 287 | — | A0A0K9QHF5 |
| S | — | protein | 405 | — | A0A0K9R856 |
| T | — | protein | 267 | — | A0A0K9RR58 |
| W | — | protein | 192 | — | A0A0K9QPY6 |
| O | — | protein | 386 | — | A0A0K9RRW6 |
| U | — | protein | 286 | — | A0A0K9RYG8 |
| Q | — | protein | 421 | — | A0A0K9QD81 |
| P | — | protein | 421 | — | A0A0K9QUR6 |
| Z | — | protein | 854 | — | A0A0K9RA51 |
| N | — | protein | 816 | — | A0A0K9RNX4 |
| R | — | protein | 380 | — | A0A0K9QVX1 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains H
- ADP · Adenosine-5'-diphosphate · ligand · chains I
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8AMZ · Spinach 19S proteasome · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q41365
- Every structure of UniProt A0A0K9QMF8
- Every structure of UniProt A0A0K9QG12
- Every structure of UniProt A0A0K9QSR5
- Every structure of UniProt A0A0K9RWB0
- Every structure of UniProt A0A0K9QR38
- Every structure of UniProt A0A0K9QHF5
- Every structure of UniProt A0A0K9R856
- Every structure of UniProt A0A0K9RR58
- Every structure of UniProt A0A0K9QPY6
- Every structure of UniProt A0A0K9RRW6
- Every structure of UniProt A0A0K9RYG8
- Every structure of UniProt A0A0K9QD81
- Every structure of UniProt A0A0K9QUR6
- Every structure of UniProt A0A0K9RA51
- Every structure of UniProt A0A0K9RNX4
- Every structure of UniProt A0A0K9QVX1
- Elsewhere: RCSB PDB 8AMZ · PDBe 8AMZ · UniProt Q41365 · UniProt A0A0K9QMF8 · UniProt A0A0K9QG12 · UniProt A0A0K9QSR5 · UniProt A0A0K9RWB0 · UniProt A0A0K9QR38 · UniProt A0A0K9QHF5 · UniProt A0A0K9R856 · UniProt A0A0K9RR58 · UniProt A0A0K9QPY6 · UniProt A0A0K9RRW6 · UniProt A0A0K9RYG8 · UniProt A0A0K9QD81 · UniProt A0A0K9QUR6 · UniProt A0A0K9RA51 · UniProt A0A0K9RNX4 · UniProt A0A0K9QVX1
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