Research workbench
Crystal structure of deinococcus radiodurans endonuclease III-1 Y100L variant
Analyse Crystal structure of deinococcus radiodurans endonuclease III-1 Y100L variant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 8A5C
- Type
- protein
- Length
- 237 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endonuclease III
- UniProt
- Q9RRQ0
- Ligands
- SF4, MG
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endonuclease III | protein | 237 | 63% helix, 0% strand | Q9RRQ0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.48 | 0.75 | 24 | empty |
| 2 | 105 | 0.40 | 0.76 | 17 | empty |
Compared structures
- 8A5C · Crystal structure of Deinococcus radiodurans Endonuclease III-1 Y100L variant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RRQ0
- Elsewhere: RCSB PDB 8A5C · PDBe 8A5C · UniProt Q9RRQ0
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