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Myristoylated HIV-1 nef anchor domain, NMR, 2 structures

Analyse Myristoylated HIV-1 nef anchor domain, NMR, 2 structures in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
1QA5
Type
protein
Length
56 residues
Chains
1
Method
solution nmr
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein (myristoylated HIV-1 nef anchor domain (myristate- GLY2 to TRP57))
UniProt
P04324
Ligands
MYR, NH2

Structure

solution nmr · 1 distinct chain · 18% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein (myristoylated HIV-1 nef anchor domain (myristate- GLY2 to TRP57))protein5618% helix, 0% strandP04324

Ligands and binding sites

  • MYR · Myristic acid · ligand · chains A
  • NH2 · Amino group · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 lipid (myristoylation).

Compared structures

  • 1QA5 · Myristoylated HIV-1 nef anchor domain, NMR, 2 structures · the same entry in another collection · chain A against A, TM-score 1.00

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