Research workbench
SARS-cov-2 omicron BA.4/5 rbd in complex with beta-27 Fab and C1 nanobody
Analyse SARS-cov-2 omicron BA.4/5 rbd in complex with beta-27 Fab and C1 nanobody in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ZXU
- Type
- protein
- Length
- 746 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| E | — | protein | 197 | — | P0DTC2 |
| A | — | protein | 124 | — | — |
| H | — | protein | 212 | — | — |
| L | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains E
- GOL · Glycerol · additive · 10 copies · chains E, A, H, L
- IPA · Isopropyl alcohol · additive · 6 copies · chains E, H, L
- PG4 · Tetraethylene glycol · additive · chains E, H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7ZXU · SARS-CoV-2 Omicron BA.4/5 RBD in complex with Beta-27 Fab and C1 nanobody · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7ZXU · PDBe 7ZXU · UniProt P0DTC2
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