Research workbench
Crystal structure of uncharacterized conserved protein DUF302 from bacillus stearothermophilus
Analyse Crystal structure of uncharacterized conserved protein DUF302 from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q9U
- Type
- protein
- Length
- 256 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein APC35924
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein APC35924 | protein | 128 | 48% helix, 27% strand | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 17 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.74 | 0.99 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1863 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (artifact, oxidation).
Compared structures
- 1Q9U · Crystal structure of uncharacterized conserved protein DUF302 from Bacillus… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1Q9U · PDBe 1Q9U
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