Research workbench
Phage defence protein
Analyse Phage defence protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ZGE
- Type
- protein
- Length
- 583 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Brxa, a brex phage defence protein
- UniProt
- B7L3Y4
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 65% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Brxa, a brex phage defence protein | protein | 199 | 63% helix, 2% strand | B7L3Y4 |
| C | Brxa, a brex phage defence protein | protein | 185 | 66% helix, 2% strand | B7L3Y4 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 694 | 0.75 | 0.80 | 82 | empty |
| 2 | 494 | 0.66 | 0.77 | 43 | empty |
| 3 | 129 | 0.44 | 0.76 | 15 | empty |
| 4 | 51 | 0.33 | 0.78 | 15 | empty |
Interfaces
2 interfaces between chains.
- A–C · 581 Ų buried · 4 hydrogen bonds · protein-protein
- A–B · 454 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 7ZGE · BrxA, BREX phage defence protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7L3Y4
- Elsewhere: RCSB PDB 7ZGE · PDBe 7ZGE · UniProt B7L3Y4
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