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Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis

Analyse Structure of polyketide synthase associated protein 5 from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1Q9J
Type: protein
Length: 787 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyketide synthase associated protein 5
UniProt: P96208
Pockets: 11 · best druggability 0.83

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyketide synthase associated protein 5	protein	388	32% helix, 23% strand	P96208
B	Polyketide synthase associated protein 5	protein	399	33% helix, 25% strand	P96208

Pockets

11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	227	0.83	0.95	46	empty
2	526	0.81	0.87	61	empty
3	357	0.60	0.77	46	empty
4	167	0.52	0.79	27	empty
5	83	0.43	0.79	20	empty

Interfaces

1 interface between chains.

A–B · 109 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1Q9J · Structure of polyketide synthase associated protein 5 from Mycobacterium tuberculosis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P96208
Elsewhere: RCSB PDB 1Q9J · PDBe 1Q9J · UniProt P96208

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