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Unspecific peroxygenase from collariella virescens

Analyse Unspecific peroxygenase from collariella virescens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7ZCL
Type: protein
Length: 453 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Collariella virescens upo
EC: 1.11.2.1
Ligands: HEC, MG
Pockets: 7 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 51% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Collariella virescens upo (EC 1.11.2.1)	protein	226	50% helix, 4% strand	—
B	Collariella virescens upo (EC 1.11.2.1)	protein	227	52% helix, 4% strand	—

Ligands and binding sites

HEC · Heme C · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	318	0.85	0.95	37	HEC
2	310	0.85	0.95	42	HEC
3	67	0.48	0.84	13	empty
4	94	0.43	0.79	14	empty
5	108	0.38	0.75	21	empty

Interfaces

1 interface between chains.

A–B · 1343 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

7ZCL · Unspecific peroxygenase from Collariella virescens · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7ZCL · PDBe 7ZCL

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