Research workbench
Subtomogram averaging of rubisco from native halothiobacillus carboxysomes
Analyse Subtomogram averaging of rubisco from native halothiobacillus carboxysomes in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7ZBT
- Type
- protein
- Length
- 4,416 residues
- Chains
- 16
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase small…
- EC
- 4.1.1.39
- UniProt
- O85040, P45686
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 2 distinct chains · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) | protein | 444 | 43% helix, 18% strand | O85040 |
| I, M, J, K, L, N, O, P | Ribulose bisphosphate carboxylase small subunit | protein | 108 | 28% helix, 25% strand | P45686 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1104 | 0.82 | 0.83 | 112 | empty |
| 2 | 1076 | 0.81 | 0.83 | 111 | empty |
| 3 | 1020 | 0.79 | 0.81 | 74 | empty |
| 4 | 1001 | 0.78 | 0.80 | 67 | empty |
| 5 | 855 | 0.74 | 0.79 | 71 | empty |
Interfaces
48 interfaces between chains.
- A–G · 3587 Ų buried · 44 hydrogen bonds · protein-protein
- D–F · 3574 Ų buried · 44 hydrogen bonds · protein-protein
- C–E · 3538 Ų buried · 43 hydrogen bonds · protein-protein
- B–H · 3511 Ų buried · 42 hydrogen bonds · protein-protein
- O–G · 1516 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 7ZBT · Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O85040
- Every structure of UniProt P45686
- Elsewhere: RCSB PDB 7ZBT · PDBe 7ZBT · UniProt O85040 · UniProt P45686
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