Research workbench
Structure of the T207D single-point mutant of the fluorescent protein NEONCYAN1 at pH 6.5
Analyse Structure of the T207D single-point mutant of the fluorescent protein NEONCYAN1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7Z7Q
- Type
- protein
- Length
- 869 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- NEONCYAN1
- UniProt
- B1PNC0
- Pockets
- 3 · best druggability 0.85
Structure
x-ray diffraction · 3 distinct chains · 9% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | NEONCYAN1 | protein | 223 | 10% helix, 54% strand | B1PNC0 |
| C | NEONCYAN1 | protein | 212 | 8% helix, 58% strand | B1PNC0 |
| D | NEONCYAN1 | protein | 211 | 9% helix, 57% strand | B1PNC0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1092 | 0.85 | 0.86 | 124 | empty |
| 2 | 120 | 0.50 | 0.80 | 26 | empty |
| 3 | 93 | 0.37 | 0.76 | 22 | empty |
Interfaces
5 interfaces between chains.
- B–C · 715 Ų buried · 12 hydrogen bonds · protein-protein
- A–C · 460 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 360 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 359 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 39 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (nonstandard).
Compared structures
- 7Z7Q · Structure of the T207D single-point mutant of the fluorescent protein NeonCyan1 at pH 6.5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1PNC0
- Elsewhere: RCSB PDB 7Z7Q · PDBe 7Z7Q · UniProt B1PNC0
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