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Crystal structure of ZN2+-transporter bbzip in a metal-stripped state

Analyse Crystal structure of ZN2+-transporter bbzip in a metal-stripped state in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7Z6N
Type: protein
Length: 536 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative membrane protein
UniProt: A0A0H3LM39
Ligands: SO4
Pockets: 6 · best druggability 0.76

Structure

x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative membrane protein	protein	275	82% helix, 0% strand	A0A0H3LM39
B	Putative membrane protein	protein	261	81% helix, 0% strand	A0A0H3LM39

Ligands and binding sites

SO4 · Sulfate ion · ion · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	394	0.76	0.85	34	empty
2	376	0.71	0.82	45	empty
3	333	0.70	0.83	35	SO4
4	238	0.69	0.85	35	empty
5	157	0.52	0.80	31	empty

Interfaces

1 interface between chains.

A–B · 849 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

7Z6N · Crystal structure of Zn2+-transporter BbZIP in a metal-stripped state · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3LM39
Elsewhere: RCSB PDB 7Z6N · PDBe 7Z6N · UniProt A0A0H3LM39

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