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Ubiquitin-like domain of human ZFAND1

Analyse Ubiquitin-like domain of human ZFAND1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7Y39
Type: protein
Length: 263 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AN1-type zinc finger protein 1
UniProt: Q8TCF1
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 2 distinct chains · 28% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AN1-type zinc finger protein 1	protein	130	28% helix, 27% strand	Q8TCF1
B	AN1-type zinc finger protein 1	protein	133	28% helix, 26% strand	Q8TCF1

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.36	0.76	16	empty

Interfaces

1 interface between chains.

A–B · 473 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

7Y39 · Ubiquitin-like domain of human ZFAND1 · the same entry in another collection · chain A against A, TM-score 1.00
Q8TCF1 · AlphaFold monomer V2.0 prediction for AN1-type zinc finger protein 1 (Q8TCF1) · a predicted model of the same protein · chain A against A, TM-score 0.88

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8TCF1
Elsewhere: RCSB PDB 7Y39 · PDBe 7Y39 · UniProt Q8TCF1

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