Research workbench
Misfolded tetrahymena ribozyme conformation 2
Analyse Misfolded tetrahymena ribozyme conformation 2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7XSL
- Type
- RNA
- Length
- 388 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (388-mer)
- Pockets
- 15 · best druggability 0.75
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | RNA (388-mer) | rna | 388 | — | — |
Pockets
15 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 808 | 0.75 | 0.80 | 39 | empty |
| 2 | 729 | 0.71 | 0.79 | 33 | empty |
| 3 | 1198 | 0.69 | 0.75 | 58 | empty |
| 4 | 654 | 0.68 | 0.78 | 28 | empty |
| 5 | 303 | 0.67 | 0.83 | 30 | empty |
Compared structures
- 7XSL · Misfolded Tetrahymena ribozyme conformation 2 · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7XSL · PDBe 7XSL
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