Research workbench
Misfolded tetrahymena ribozyme conformation 1
Analyse Misfolded tetrahymena ribozyme conformation 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7XSK
- Type
- RNA
- Length
- 388 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (388-mer)
- Pockets
- 16 · best druggability 0.77
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| N | RNA (388-mer) | rna | 388 | — | — |
Pockets
16 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1138 | 0.77 | 0.80 | 65 | empty |
| 2 | 1179 | 0.70 | 0.76 | 54 | empty |
| 3 | 824 | 0.68 | 0.76 | 34 | empty |
| 4 | 619 | 0.62 | 0.75 | 29 | empty |
| 5 | 656 | 0.61 | 0.74 | 39 | empty |
Compared structures
- 7XSK · Misfolded Tetrahymena ribozyme conformation 1 · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7XSK · PDBe 7XSK
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