Research workbench
Crystal structure of escherichia COLI DNA polymerase II
Analyse Crystal structure of escherichia COLI DNA polymerase II in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1Q8I
- Type
- protein
- Length
- 708 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase II
- EC
- 2.7.7.7
- UniProt
- P21189
- Pockets
- 10 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase II (EC 2.7.7.7) | protein | 708 | 41% helix, 24% strand | P21189 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 462 | 0.70 | 0.81 | 54 | empty |
| 2 | 120 | 0.63 | 0.87 | 34 | empty |
| 3 | 59 | 0.60 | 0.91 | 16 | empty |
| 4 | 232 | 0.56 | 0.78 | 29 | empty |
| 5 | 137 | 0.51 | 0.80 | 29 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P21189
- Elsewhere: RCSB PDB 1Q8I · PDBe 1Q8I · UniProt P21189
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